Template:GNF Protein box

2007-09-10T05:30:45Z

68.111.146.250: Minor change to titles...

{| id="drugInfoBox" style="float: right; clear: right; margin: 0 0 0.5em 1em; background: #ffffff;" class="toccolours" border=0 cellpadding=2 align=right width="280px"
|- style="text-align: center; line-height: 1;"
{{#if: {{{caption|}}} | {{!}} colspan="3" {{!}} {{{caption}}} }}
|-
| align="center" colspan="3" | <div style="font-size:medium; line-height:167%;">{{{Name|{{PAGENAME}} }}}</div>
|-
{{#if: {{{image|}}}
| {{!}} align="center" colspan="3" {{!}} [[Image:{{{image}}}{{!}}250px]]
{{#if: {{{image_source|}}}
|
{{!-}}
{{!}} align="right" colspan="3" {{!}} '''Image source: {{{image_source}}}'''
|
}}
| <includeonly>[[Category: Protein pages needing a picture]]</includeonly>
}}
|-
{{#if: {{{PDB|}}}
| {{!}} align="right" colspan="3" style="border-top:2px solid #dddddd" {{!}} Available structures: {{{PDB}}}
|
}}
|-
| align="center" colspan="3" bgcolor="#dddddd" | '''Identifiers'''
|-
| bgcolor="#e7dcc3" | [[HUGO|Symbol(s)]]
| bgcolor="#eeeeee" colspan="2" align="center" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| [http://www.gene.ucl.ac.uk/nomenclature/data/get_data.php?hgnc_id=HGNC:{{{HGNCid}}} {{{Symbol}}}]{{{AltSymbols}}}
|-
{{#ifeq: {{User:AndrewGNF/cat|{{{OMIM}}}|{{{MGIid}}}|{{{Homologene}}}}}| | |
{{!}} bgcolor="#e7dcc3" {{!}} External IDs
{{!}} bgcolor="#eeeeee" colspan="2" align="center" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} {{#if:{{{OMIM|}}}|{{OMIM5|{{{OMIM}}}}}|}} {{#if:{{{MGIid|}}}|{{MGI|{{{MGIid}}}}}|}} {{#if:{{{Homologene|}}}|{{Homologene|{{{Homologene}}}}}|}} }}
|-
| align="center" colspan="3" cellpadding=0 |
{| class="collapsible collapsed" border=0 width=100%
! colspan=3 bgcolor="#dddddd" |'''[[Gene Ontology]]'''
|-
{{#if: {{{ECnumber|}}} |
{{!}} bgcolor="#e7dcc3" {{!}} [[EC number]]
{{!}} bgcolor="#eeeeee" colspan="2" align="center" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} [http://www.genome.jp/dbget-bin/www_bget?enzyme+{{{ECnumber}}} {{{ECnumber}}}] }}
|-
{{#if: {{{Function|}}} |
{{!}} bgcolor="#e7dcc3" align="left" {{!}} '''Molecular Function:'''
{{!}} bgcolor="#eeeeee" colspan="2" align="left" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} {{{Function}}} }}
|-
{{#if: {{{Component|}}} |
{{!}} bgcolor="#e7dcc3" align="left" {{!}} '''Cellular Component:'''
{{!}} bgcolor="#eeeeee" colspan="2" align="left" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} {{{Component}}} }}
|-
{{#if: {{{Process|}}} |
{{!}} bgcolor="#e7dcc3" align="left" {{!}} '''Biological Process:'''
{{!}} bgcolor="#eeeeee" colspan="2" align="left" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} {{{Process}}} }}
|}
|-
{{#if: {{{GeneAtlas_image1|}}} |
{{!}} align="center" colspan="3" bgcolor="#dddddd" {{!}} '''Expression pattern'''
{{!-}}
{{!}} bgcolor="#eeeeee" colspan="3" align="center" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} {{#if: {{{GeneAtlas_image1|}}} | [[Image:{{{GeneAtlas_image1}}} | 250px]] 
}} {{#if: {{{GeneAtlas_image2|}}} | [[Image:{{{GeneAtlas_image2}}} | 250px]] 
}} {{#if: {{{GeneAtlas_image3|}}} | [[Image:{{{GeneAtlas_image3}}} | 250px]] }}
[http://symatlas.gnf.org/SymAtlas/symquery?q={{{Symbol}}} More reference expression data]
}}

|-
| align="center" colspan="3" bgcolor="#dddddd" | '''Orthologs'''
|-
{{#if: {{{Orthologs|}}} |
{{!}} {{{Orthologs}}}
}}
|-
|}
<includeonly>[[Category:Proteins]]</includeonly><noinclude>

Note: Modified version of the standard [[Template:Protein]]. [[User:AndrewGNF|AndrewGNF]] 01:38, 7 March 2007 (UTC)

:Eventually I see integrating this into the main [[Template:Protein]] infobox, but I'm keeping it separate for a moment to avoid breaking anything there. [[User:AndrewGNF|AndrewGNF]] 19:06, 9 March 2007 (UTC)

==Usage==
To use this template, copy the following text and paste it at the top of your article. Fill in as many fields as possible, but don't worry if some information is missing. For an example of a filled-out template, see [[ITK (gene)]].

<pre>
{{GNF_Protein_box
| Name =
| image =
| image_source =
| PDB =
| HGNCid =
| MGIid =
| Symbol =
| AltSymbols =
| OMIM =
| ECnumber =
| Homologene =
| GeneAtlas_image =
| Function =
| Orthologs =
}}
</pre>

==Parameter explanations==
===Name===
* This field lists the full name of the protein, ideally from a nomenclature authority like [http://www.gene.ucl.ac.uk/nomenclature/ HGNC]. Note that there is a separate '''symbol''' field below.

===image ===
* This field specifies an image file that displays a two-dimensional view of the three-dimensional structure, typically created from a [[Protein Data Bank|PDB]] file.
* If an '''image''' is specified, then the '''image_source''' parameter should be used to specify the structure used to generate the image, preferably using the [[Template:PDB2]].

===PDB ===
* This field is used to display a list of available PDB entries. Enter as a list of [[Template:PDB2|PDB templates]], e.g., "<code><nowiki>{{PDB2|1SNX}}, {{PDB2|2ETZ}}</nowiki></code>"

===HGNCid ===
* This field lists the unique identifier from the [http://www.gene.ucl.ac.uk/nomenclature/ HGNC (HUGO Gene Nomenclature Committee)].

===MGIid ===
* This field lists the unique identifier from the [[Mouse Genome Informatics]] site.

===Symbol ===
* This field lists the official symbol of the protein, ideally from a nomenclature authority like [http://www.gene.ucl.ac.uk/nomenclature/ HGNC]. Note that there is a separate '''Name''' field above.

===AltSymbols===
* This field lists other symbols that are used in public databases or in the literature.

===OMIM ===
* This field lists the unique identifier(s) in the [[OMIM|Mendelian Inheritance in Man]] database.

===ECnumber ===
* This field lists the [[EC number]].

===Homologene ===
* This field lists the unique identifer in the [[HomoloGene]] database.

===GeneAtlas_image#===
* This field gives the filename of a GeneAtlas expression pattern, showing where the gene is expressed across diverse anatomic tissues. Replace # with a value 1 to 3.

===Function ===
* This field lists gene function, typically derived from [[Gene Ontology]]. This entry can be populated as a list of [[Template:GNF_GO|GNF_GO templates]], e.g., "<code><nowiki>{{GNF_GO|id=GO:0000166}}{{GNF_GO|id=GO:0004715}}</nowiki></code>"

===Component ===
* This field lists gene component function, typically derived from [[Gene Ontology]]. This entry can be populated as a list of [[Template:GNF_GO|GNF_GO templates]], e.g., "<code><nowiki>{{GNF_GO|id=GO:0000166}}{{GNF_GO|id=GO:0004715}}</nowiki></code>"

===Process ===
* This field lists gene process function, typically derived from [[Gene Ontology]]. This entry can be populated as a list of [[Template:GNF_GO|GNF_GO templates]], e.g., "<code><nowiki>{{GNF_GO|id=GO:0000166}}{{GNF_GO|id=GO:0004715}}</nowiki></code>"

===Orthologs ===
* This field shows species-specific identifiers from multiple organisms. This field should use the [[Template:GNF_Ortholog_box|GNF_Ortholog_box template]].

[[Category:Biology infobox templates|{{PAGENAME}}]]
[[ca:plantilla:Protein]]
[[it:template:Proteina]]
</noinclude>

IdeaWazaWiki - User contributions [en]

Template:GNF Protein box