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wikademia>JonSDSUGrad

wikademia>JonSDSUGrad
Added org human/mouse to url connection.
wikademia>JonSDSUGrad
Huge modification to allow for fields to be optional.
Line 7: Line 7:
| bgcolor="#e7dcc3" | Human
| bgcolor="#e7dcc3" | Human
| bgcolor="#e7dcc3" | Mouse
| bgcolor="#e7dcc3" | Mouse
|-
<!--
| bgcolor="#e7dcc3" | [[Entrez]]
{{#if:
| bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| <span class=plainlinks>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=retrieve&amp;dopt=default&amp;list_uids={{{Hs_EntrezGene}}}&rn=1 {{{Hs_EntrezGene}}}]</span>
  {{ #if: Human | | }}
| bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| <span class=plainlinks>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=retrieve&amp;dopt=default&amp;list_uids={{{Mm_EntrezGene}}}&rn=1 {{{Mm_EntrezGene}}}]</span>
  {{ #if: Mouse | | }}
|-
  | something
| bgcolor="#e7dcc3" | [[Ensembl]]
  | nothing
| bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| <span class=plainlinks><small><small>[http://www.ensembl.org/Homo_sapiens/geneview?gene={{{Hs_Ensembl}}};db=core {{{Hs_Ensembl}}}]</small></small></span>
}}
| bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| <span class=plainlinks><small><small>[http://www.ensembl.org/Mus_musculus/geneview?gene={{{Mm_Ensembl}}};db=core {{{Mm_Ensembl}}}]</small></small></span>
-->
|-
{{ #if:  
| bgcolor="#e7dcc3" | [[Uniprot]]
  {{ #if: {{{Hs_EntrezGene|}}} |x | }}
| bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| {{Uniprot|{{{Hs_Uniprot}}}}}
  {{ #if: {{{Mm_EntrezGene|}}} |x | }}
| bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| {{Uniprot|{{{Mm_Uniprot}}}}}
  | {{!-}}
|-
    {{!}} bgcolor="#e7dcc3" {{!}} [[Entrez]]
| bgcolor="#e7dcc3" | Refseq
    {{ #if: {{{Hs_EntrezGene|}}}
| bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| <span class=plainlinks>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqmRNA}}} {{{Hs_RefseqmRNA}}}] <small>(mRNA)</small><br>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqProtein}}} {{{Hs_RefseqProtein}}}] <small>(protein)</small></span>
        | {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} <span class=plainlinks>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=retrieve&amp;dopt=default&amp;list_uids={{{Hs_EntrezGene}}}&rn=1 {{{Hs_EntrezGene}}}]</span>
| bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| <span class=plainlinks>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqmRNA}}} {{{Mm_RefseqmRNA}}}] <small>(mRNA)</small><br>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqProtein}}} {{{Mm_RefseqProtein}}}] <small>(protein)</small></span>
        | {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} na }}
|-
    {{ #if: {{{Mm_EntrezGene|}}}
| bgcolor="#e7dcc3" | Location
        | {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} <span class=plainlinks>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&amp;cmd=retrieve&amp;dopt=default&amp;list_uids={{{Mm_EntrezGene}}}&rn=1 {{{Mm_EntrezGene}}}]</span>
| bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| <span class=plainlinks>[http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human?db={{{Hs_GenLoc_db}}}&position=chr{{{Hs_GenLoc_chr}}}:{{{Hs_GenLoc_start}}}-{{{Hs_GenLoc_end}}} Chr{{{Hs_GenLoc_chr}}}: {{#expr: {{{Hs_GenLoc_start}}} / 1000000 round 2}} - {{#expr: {{{Hs_GenLoc_end}}} / 1000000 round 2}} Mb]</span>
        | {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} na }}
| bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"| <span class=plainlinks>[http://genome.ucsc.edu/cgi-bin/hgTracks?org=Mouse?db={{{Mm_GenLoc_db}}}&position=chr{{{Mm_GenLoc_chr}}}:{{{Mm_GenLoc_start}}}-{{{Mm_GenLoc_end}}} Chr{{{Mm_GenLoc_chr}}}: {{#expr: {{{Mm_GenLoc_start}}} / 1000000 round 2}} - {{#expr: {{{Mm_GenLoc_end}}} / 1000000 round 2}} Mb]</span>
  |}}
{{ #if:  
  {{ #if: {{{Hs_Ensembl|}}} |x | }}
  {{ #if: {{{Mm_Ensembl|}}} |x | }}
  | {{!-}}
      {{!}} bgcolor="#e7dcc3" {{!}} [[Ensembl]]
      {{ #if: {{{Hs_Ensembl|}}}
        |{{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} <span class=plainlinks><small><small>[http://www.ensembl.org/Homo_sapiens/geneview?gene={{{Hs_Ensembl}}};db=core {{{Hs_Ensembl}}}]</small></small></span>
        |{{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} na }}
      {{ #if: {{{Mm_Ensembl|}}}
        |{{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} <span class=plainlinks><small><small>[http://www.ensembl.org/Mus_musculus/geneview?gene={{{Mm_Ensembl}}};db=core {{{Mm_Ensembl}}}]</small></small></span>
        |{{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} na }}
  |}}
{{ #if:
  {{ #if: {{{Hs_Uniprot|}}} |x | }}
  {{ #if: {{{Mm_Uniprot|}}} |x | }}
  | {{!-}}
    {{!}} bgcolor="#e7dcc3" {{!}} [[Uniprot]]
    {{ #if: {{{Hs_Uniprot|}}}
        | {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} {{Uniprot|{{{Hs_Uniprot}}}}}
        | {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} na }}
    {{ #if: {{{Mm_Uniprot|}}}
        | {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} {{Uniprot|{{{Mm_Uniprot}}}}}
        | {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}} na }}
  |}}
{{ #if:
  {{#if: {{{Hs_RefseqmRNA|}}} |x | }}
  {{#if: {{{Hs_RefseqProtein|}}} |x | }}
  {{#if: {{{Mm_RefseqmRNA|}}} |x | }}
  {{#if: {{{Mm_RefseqProtein|}}} |x | }}
  | {{!-}}
    {{!}} bgcolor="#e7dcc3" {{!}} Refseq
<!-- I apologize to whomever may be trying to sort through these next two lines... it seems that putting a newline character was causing serious formatting issues.  Only after all of the newline characters were removed did the results look correct. -->
    {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}} <span class=plainlinks>{{ #if: {{{Hs_RefseqmRNA|}}}| [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqmRNA}}} {{{Hs_RefseqmRNA}}}]| na }} <small>(mRNA)</small><br> {{ #if: {{{Hs_RefseqProtein|}}}|[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqProtein}}} {{{Hs_RefseqProtein}}}]| na }} <small>(protein)</small> </span>
    {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}<span class=plainlinks>{{ #if: {{{Mm_RefseqmRNA|}}}| [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqmRNA}}} {{{Mm_RefseqmRNA}}}] | na }} <small>(mRNA)</small><br> {{ #if: {{{Mm_RefseqProtein|}}}| [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqProtein}}} {{{Mm_RefseqProtein}}}]| na }} <small>(protein)</small></span>
  | }}
<!--  this is a repeat of the above two lines, but in a much more reader friendly format.
 
    {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
    <span class=plainlinks>
    {{ #if: {{{Hs_RefseqmRNA|}}}
        | [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqmRNA}}} {{{Hs_RefseqmRNA}}}]
        | na }}
    <small>(mRNA)</small><br>
    {{ #if: {{{Hs_RefseqProtein|}}}
        | [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Hs_RefseqProtein}}} {{{Hs_RefseqProtein}}}]
        | na }}
    <small>(protein)</small>
    </span>
    {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
    <span class=plainlinks>
    {{ #if: {{{Mm_RefseqmRNA|}}}
        | [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqmRNA}}} {{{Mm_RefseqmRNA}}}]
        | na }}
    <small>(mRNA)</small><br>
    {{ #if: {{{Mm_RefseqProtein|}}}
        | [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val={{{Mm_RefseqProtein}}} {{{Mm_RefseqProtein}}}]
        | na }}
    <small>(protein)</small>
    </span>
-->
{{ #if:
  {{#if: {{{Hs_GenLoc_chr|}}} |x | }}
  {{#if: {{{Hs_GenLoc_start|}}} |x | }}
  {{#if: {{{Hs_GenLoc_end|}}} |x | }}
  {{#if: {{{Mm_GenLoc_chr|}}} |x | }}
  {{#if: {{{Mm_GenLoc_start|}}} |x | }}
  {{#if: {{{Mm_GenLoc_end|}}} |x | }}
  | {{!-}}
    {{!}} bgcolor="#e7dcc3" {{!}} Location
<!-- reader friendly version
    {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}}
    <span class=plainlinks>
    [http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human{{ #if: {{{Hs_GenLoc_db}}} |?db={{{Hs_GenLoc_db}}}|}}{{ #if: {{{Hs_GenLoc_chr|}}}
        |{{#if: {{{Hs_GenLoc_start|}}}
            |{{#if: {{{Hs_GenLoc_end|}}}
                |&position=chr{{{Hs_GenLoc_chr}}}:{{{Hs_GenLoc_start}}}-{{{Hs_GenLoc_end}}}
                |}}
            |}}
        |}}
    Chr {{#if:{{{Hs_GenLoc_chr|}}}|{{{Hs_GenLoc_chr|}}}|(na)}}:
    {{#if:{{{Hs_GenLoc_start|}}} | {{#expr: {{{Hs_GenLoc_start}}} / 1000000 round 2}}| (na)}} -
    {{#if:{{{Hs_GenLoc_end|}}} | {{#expr: {{{Hs_GenLoc_end}}} / 1000000 round 2}}| (na) }} Mb]
    </span>
-->
    {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}}<span class=plainlinks>[http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human{{ #if: {{{Hs_GenLoc_db}}} |?db={{{Hs_GenLoc_db}}}|}}{{ #if: {{{Hs_GenLoc_chr|}}}|{{#if: {{{Hs_GenLoc_start|}}}|{{#if: {{{Hs_GenLoc_end|}}}|&position=chr{{{Hs_GenLoc_chr}}}:{{{Hs_GenLoc_start}}}-{{{Hs_GenLoc_end}}}|}}|}}|}} Chr {{#if:{{{Hs_GenLoc_chr|}}}|{{{Hs_GenLoc_chr|}}}|(na)}}: {{#if:{{{Hs_GenLoc_start|}}} | {{#expr: {{{Hs_GenLoc_start}}} / 1000000 round 2}}| (na)}} - {{#if:{{{Hs_GenLoc_end|}}} | {{#expr: {{{Hs_GenLoc_end}}} / 1000000 round 2}}| (na) }} Mb]</span>
<!-- reader friendly version:
    {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}}
    <span class=plainlinks>
    [http://genome.ucsc.edu/cgi-bin/hgTracks?org=Mouse{{#if:{{{Mm_GenLoc_db}}}|?db={{{Mm_GenLoc_db}}}|}}{{#if: {{{Mm_GenLoc_chr|}}}
        |{{#if: {{{Mm_GenLoc_start|}}}
            |{{#if: {{{Mm_GenLoc_end|}}}
              |&position=chr{{{Mm_GenLoc_chr}}}:{{{Mm_GenLoc_start}}}-{{{Mm_GenLoc_end}}}
              |}}
            |}}
        |}}
    Chr {{#if:{{{Mm_GenLoc_chr|}}}|{{{Mm_GenLoc_chr|}}}|(na)}}:
    {{#if:{{{Mm_GenLoc_start|}}} | {{#expr: {{{Mm_GenLoc_start}}} / 1000000 round 2}}| (na)}} -
    {{#if:{{{Mm_GenLoc_end|}}} | {{#expr: {{{Mm_GenLoc_end}}} / 1000000 round 2}}| (na)}}
    Mb]
    </span>
-->
    {{!}} bgcolor="#eeeeee" style="border-top:2px solid #dddddd; border-right:2px solid #dddddd"{{!}}<span class=plainlinks>[http://genome.ucsc.edu/cgi-bin/hgTracks?org=Mouse{{#if:{{{Mm_GenLoc_db}}}|?db={{{Mm_GenLoc_db}}}|}}{{#if: {{{Mm_GenLoc_chr|}}}|{{#if: {{{Mm_GenLoc_start|}}}|{{#if: {{{Mm_GenLoc_end|}}}|&position=chr{{{Mm_GenLoc_chr}}}:{{{Mm_GenLoc_start}}}-{{{Mm_GenLoc_end}}}|}}|}}|}} Chr {{#if:{{{Mm_GenLoc_chr|}}}|{{{Mm_GenLoc_chr|}}}|(na)}}: {{#if:{{{Mm_GenLoc_start|}}} | {{#expr: {{{Mm_GenLoc_start}}} / 1000000 round 2}}| (na)}} - {{#if:{{{Mm_GenLoc_end|}}} | {{#expr: {{{Mm_GenLoc_end}}} / 1000000 round 2}}| (na)}} Mb] </span>
  |}}
|-
|-
<noinclude>
<noinclude>
Line 54: Line 157:
}}
}}
</pre>
</pre>
== Revisions ==
*Each field is now optional


== To-do list ==
== To-do list ==
*need to make each field optional
*Code may need to be made a little cleaner


[[Category:Biology infobox templates|{{PAGENAME}}]]
[[Category:Biology infobox templates|{{PAGENAME}}]]
</noinclude>
</noinclude>

Revision as of 03:39, 24 June 2007

Orthologs
Human Mouse



Usage

NOTE: use only in conjunction with Template:GNF_Protein_box! For example, see ITK (gene). 

{{GNF_Ortholog_box
 | Hs_EntrezGene =
 | Hs_RefseqmRNA =
 | Hs_RefseqProtein = 
 | Hs_GenLoc_db = 
 | Hs_GenLoc_chr =
 | Hs_GenLoc_start =
 | Hs_GenLoc_end = 
 | Hs_Uniprot = 
 | Mm_EntrezGene =
 | Mm_RefseqmRNA =
 | Mm_RefseqProtein = 
 | Mm_GenLoc_db =
 | Mm_GenLoc_chr =
 | Mm_GenLoc_start =
 | Mm_GenLoc_end = 
 | Mm_Uniprot = 
}}

Revisions

  • Each field is now optional

To-do list

  • Code may need to be made a little cleaner
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